A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:depictio: *Depictio dashboard for atacseq: feedback wanted*
<https://github.com/depictio/depictio|Depictio> (open source, from EMBL) turns the output of a workflow run into an interactive dashboard you can share, so nobody has to write a Shiny or Streamlit app for each project. Point a template at any run of a pipeline and you get the same dashboard, which you can edit (UI &amp; YAML), version and comment.
:dna: The *<https://showcases.depictio.embl.org/dashboard/6accf196a57cdb54ef9a22f6|atacseq dashboard template>* (no account needed) shows library quality (TSS enrichment, fragment sizes), called peaks with their gene annotation and consensus peaks.
:raised_hands: *We need your help!* Feedback and ideas welcome in <#C0AFS06G9HR> (all templates and details there) or in the <https://github.com/depictio/depictio/discussions/1212|atacseq GitHub discussion>.

atacseq_peaks.mp4

Hey there! :depictio-loading: The *<https://depictio.github.io/depictio-docs/latest/pipeline-templates/nf-core/atacseq/|atacseq>* dashboard just got a big update
:mag: *Genome browser (JBrowse 2)*, the main feature of 1.20: the signal and peak tracks, in the new Locus tab. <https://depictio.github.io/depictio-docs/stable/features/genome-browser/|Docs, with examples>
:new: *Reworked Overview, new Locus tab with the signal tracks, an (i) on each chart that explains how to read it, a colour key in the study card*. *<https://showcases.depictio.embl.org/dashboard/6accf196a57cdb54ef9a22f6|atacseq dashboard>*
:raised_hands: Have a look and tell us what you think, in <#C0AFS06G9HR> or in the <https://github.com/depictio/depictio/discussions/1212|atacseq GitHub discussion>. Even one line helps!