depictio Depictio dashboard for mag: your feedback wanted
Hi all! ๐ I am building
Depictio, an open-source platform from EMBL to explore pipeline results without writing a Shiny or Streamlit app each time. A pipeline gets a
dashboard template: a short definition that turns the outputs of any run into an interactive dashboard. I am now sharing it more widely, so I would like the view of mag users and developers.
โจ
What it does
โข
MultiQC reports (aggregated across runs) next to result
tables,
images,
phylogenetic trees,
maps... with
linked filters
โข
Reusable: point the template at any new run of the same pipeline and you get the same dashboard
โข
Fully editable: modify any dashboard from the
GUI or in
YAML, so the template is a starting point, not a constraint
โข
Versioned, with
comments and annotations on any component
โข Runs as a
Python package, with
Docker Compose or on
Kubernetes, and can serve as a
companion web app for a publication
๐งช
For mag: assembly contiguity, contig coverage per sample, bin completeness and contamination, bin taxonomy, annotation and a per-bin detail view, next to the MultiQC report.
๐
What I need: I have built 25 templates and want people who really use these pipelines to review and criticise them. What is useful? What is misleading?
๐ Dashboard:
mag dashboard (no account needed)
๐ฌ Comment on the dashboard (Google sign-in) or in the
GitHub discussion dedicated to mag.
โญ A star on the
repo is welcome if you find it useful. Thanks! ๐
๐ค I was speaking about Depictio at the Nextflow Summit (
session page), and the recording will be available in the coming weeks.