Do we have mag-inclined folks at the hackathon this week? I suggested working on some improvements to our already great pipeline. Curious to see if there is interest already? https://nf-co.re/hackathon-projects/hackathon-barcelona-2026/mag-improvements

I Will be joining in the end! I might try straddling your group and the meta pipeline a group - see how far I can get with linking e.g. mag to funcscan

Yep 🫡

Then let's try and coordinate the two tables to be close to each other 😬

I know people

Looking forward to get to know those people! 😄

Hey @Jonathan Rondeau-Leclaire! Thanks for handling this. As I said earlier I don't think I will be available to join the hackaton online, but I will be keeping an eye for reviews and helping with any question that could arise. But if @James Fellows Yates is there, you'll be in good hands :D

Let me know if you want to prioritise anything @Diego Alvarez Saravia And I can help Jonathan out :)

Depending on the people interested, but I propose these: • Replace QUAST by BBMap statswrapper.sh • Add myloasm • Add bakta • Add Binnete, if @Jean Mainguy is ok with that • And a more structural change: pass params as parameters to subworkflows instead of using directly in the code (

params.asdf

) . I will try to open a PR with the conversion to workflow outputs (I have that somewhat advanced, but still not finished). Any others proposals <!subteam^S08MYEKMNTX>?

Extract circular contigs from (long read) genome assemblies?

Sure, I'm ok with that. 👌 I haven't had time to work on integrating Binette, but I'd be happy to see it moving forward. Otherwise, I should have more time to tackle it in November.

@Jonathan Rondeau-Leclaire the meta-pipeline table was originally next to the mag table but then was moved; I'll come and visit every now and then 🙂 If you have any questions the meta-pipeline table is at the front next to the stage's sound desk

@James Fellows Yates I was wondering if you met @Jonathan Rondeau-Leclaire already

yup we just met briefly!