Niklas Schandry
07/03/2026, 10:55 AMnf-core pipelines lint locally, it takes much longer than when it happens on CI. Is there some magic in the CI to make it faster that I could replicate locally?mashehu
07/03/2026, 11:25 AMNiklas Schandry
07/03/2026, 11:26 AMNiklas Schandry
07/03/2026, 11:28 AM<http://4.0.3.dev|4.0.3.dev> locallymashehu
07/03/2026, 11:37 AMNiklas Schandry
07/03/2026, 11:42 AM4.0.2Niklas Schandry
07/03/2026, 11:43 AMmashehu
07/03/2026, 11:43 AMn-core --verbose p l you will get a bit more insight where it is stuck.Niklas Schandry
07/03/2026, 11:44 AMNiklas Schandry
07/03/2026, 11:52 AMgit checkout is taking a while every timemashehu
07/03/2026, 11:55 AMNiklas Schandry
07/03/2026, 11:56 AMNiklas Schandry
07/03/2026, 11:58 AM<http://4.0.3.dev|4.0.3.dev> it is not compatible with the CI running at 4.0.2?mashehu
07/03/2026, 11:59 AMNiklas Schandry
07/03/2026, 12:16 PMKeyError: 'manifest.name' after switching back to 4.0.2 and attempting to lint?mashehu
07/03/2026, 12:17 PM~/.config/nfcore (we put parsed configs there and changed a bit of the parsing in 4.0.3)Niklas Schandry
07/03/2026, 12:19 PM~/.config/nf-core is the cache for the modules repo, the cached workflow configs are in ~/.nextflow/nf-core (I only know this because I was watching the verbose output for a while).mashehu
07/03/2026, 12:21 PMNiklas Schandry
07/03/2026, 12:22 PMgit gc in ~/.config/nf-core/modules did not make things faster, fyi