A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *rnavar/test_full* failed :crying_cat_face: *Run Name*
cranky_banach *Duration*
1h 54m 39s *Status*
:x: Failed *Error Message*
```12:52PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
12:52PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0cee36be726bf1de3 instance-type=c6id.24xlarge
12:52PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
12:57PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
1:02PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
1:07PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
FUSION_GPU_USED=false
1:11PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: BBCGSPKTWK1WJY35, HostID: 3Dp5b8rBy5DZ9896XIlx655nfJFx5/2ZAu5BLVIpjzk3Sy1El7vCQyirx+H2tQlj0mj9szO44D4=, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=264744 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/85/61f4c70d70ee37e5459383dcbe0814/H1_REP2.md.bam length=6845104128 offset=0
1:11PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=264749 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/85/61f4c70d70ee37e5459383dcbe0814/H1_REP2.md.bam.d8g293hrlhnc75pk5bhg.7381975040.d8g2771rlhnc75pk52rg.chk length=134217728 offset=0
1:11PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=264757 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/85/61f4c70d70ee37e5459383dcbe0814/H1_REP2.md.bam.d8g2aahrlhnc75pk5fbg.8455716864.d8g2771rlhnc75pk52rg.chk length=134217728 offset=0
1:11PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: Uplo...``` *Command Line*
```nextflow run '<https://github.com/nf-core/rnavar>' -name cranky_banach -params-file '<https://api.cloud.seqera.io/ephemeral/wtYRYkmZUFdjvum-Ze1Ccg.json>' -with-tower -r a0e4641409eb7aed4b325e543d20577f9c08e437 -profile test_full``` Jun 3, 2026 at 1:11 PM