A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *rnavar/test_full* failed :crying_cat_face: *Run Name*
gigantic_plateau *Duration*
2h 13m 23s *Status*
:x: Failed *Error Message*
```11:34AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
11:34AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-09baed2ec8e22125d instance-type=c6id.32xlarge
11:34AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
11:39AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
11:44AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
11:49AM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
FUSION_GPU_USED=false
11:50AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: 7HAFESYY4SB7NVEM, HostID: obYBEUuwCKeeKiuLEdSuBSt+0cM1OuRC8yUrA4TlCK5/w7L6y8lGjJ1ERLZq/ES9Qgh9k/ZQOEf5CnKDsMAK7aBpRTWachLs, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=240374 id=/s3/nf-core-awsmegatests/work/rnavar/work-59e2f912b1f6aeca44450a8f8f030e7fedc84028/9c/81c00c26e56a85211e971cc2a003a8/GM12878_REP1.md.bam length=9663676416 offset=0
11:50AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=240385 id=/s3/nf-core-awsmegatests/work/rnavar/work-59e2f912b1f6aeca44450a8f8f030e7fedc84028/9c/81c00c26e56a85211e971cc2a003a8/GM12878_REP1.md.bam.d8g15ap1u1ds7667rmug.11005853696.d8g12f91u1ds7667rbt0.chk length=134217728 offset=0
11:50AM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=240377 id=/s3/nf-core-awsmegatests/work/rnavar/work-59e2f912b1f6aeca44450a8f8f030e7fedc84028/9c/81c00c26e56a85211e971cc2a003a8/GM12878_REP1.md.bam.d8g13r91u1ds7667rl90.9932111872.d8g12f91u1ds7667rbt0.chk length=134217728 offset=0
11:50AM ERR [seqera-fusion] cannot upload...``` *Command Line*
```nextflow run '<https://github.com/nf-core/rnavar>' -name gigantic_plateau -params-file '<https://api.cloud.seqera.io/ephemeral/MtyXqIfr635sjzaEa3S1FA.json>' -with-tower -r 59e2f912b1f6aeca44450a8f8f030e7fedc84028 -profile test_full``` Jun 3, 2026 at 11:51 AM