A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *rnavar/test_full* failed :crying_cat_face: *Run Name*
cranky_banach_2 *Duration*
1h 3m 9s *Status*
:x: Failed *Error Message*
```12:32PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
12:32PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0fc0777c66c2e4720 instance-type=c6id.8xlarge
12:32PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
12:37PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
FUSION_GPU_USED=false
12:39PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: CBC53A3J432Y5TDM, HostID: AHjISuX5cbr1wH/C40V+wX8/J+whLZoTceYAD/znPtoVxCn7hI5v8xTDQw0b7oWUv3NACyqo9Zw=, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=129836 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/90/d9a2b93b53f08f3f86ae25692df9c9/H1_REP1.md.bam length=13421772800 offset=0
12:39PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=129868 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/90/d9a2b93b53f08f3f86ae25692df9c9/H1_REP1.md.bam.d8jbfv007fsc75c5so9g.15435038720.d8jbcso07fsc75c5sfbg.chk length=28295377 offset=0
12:39PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=129837 id=/s3/nf-core-awsmegatests/work/rnavar/work-a0e4641409eb7aed4b325e543d20577f9c08e437/90/d9a2b93b53f08f3f86ae25692df9c9/H1_REP1.md.bam.d8jbdqo07fsc75c5sll0.13421772800.d8jbcso07fsc75c5sfbg.chk length=134217728 offset=0
12:39PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=129867 id=/s3/nf-core-awsmegatests/wo...``` *Command Line*
```nextflow run '<https://github.com/nf-core/rnavar>' -name cranky_banach_2 -params-file '<https://api.cloud.seqera.io/ephemeral/bdw0NyTpSxGzeqtreVgP_A.json>' -with-tower -r a0e4641409eb7aed4b325e543d20577f9c08e437 -profile test_full -resume 3aabc7d0-6bcf-4401-926f-b0c965a5289d``` Jun 8, 2026 at 12:40 PM