:x: scrnaseq/test_full failed :crying_cat_face: Ru...
# scrnaseqf
Full test notifications
05/28/2026, 1:56 PM❌ scrnaseq/test_full failed 😿 Run Name
condescending_descartes Duration
9m 36s Status
❌ Failed Error Message
Copy code
1:55PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
1:55PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0a717b0eba0163bf9 instance-type=m6id.12xlarge
1:55PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
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Martian Runtime - v4.0.14
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Running preflight checks (please wait)...
2026-05-28 13:55:19 [runtime] (ready) ID.mkref_cellranger_reference.MAKE_REFERENCE._MAKE_REFERENCE
2026-05-28 13:55:19 [runtime] (run:local) ID.mkref_cellranger_reference.MAKE_REFERENCE._MAKE_REFERENCE.fork0.split
2026-05-28 13:55:19 [runtime] (split_complete) ID.mkref_cellranger_reference.MAKE_REFERENCE._MAKE_REFERENCE
2026-05-28 13:55:19 [runtime] (run:local) ID.mkref_cellranger_reference.MAKE_REFERENCE._MAKE_REFERENCE.fork0.join
2026-05-28 13:56:03 [runtime] (failed) ID.mkref_cellranger_reference.MAKE_REFERENCE._MAKE_REFERENCE
[error] mkref has failed: error building reference package
Error detected in GTF file: Parsing GTF on line 284226: source: cannot contain spaces
Line = 'chr11 Curated Genomic exon 5225466 5225726 . - . gene_id "HBB"; gene_name "HBB"; p_id "P21712"; transcript_id "NM_000518.4"; tss_id "TSS44384";'
2026-05-28 13:56:03 Shutting down.
Saving pipestance info to "mkref_cellranger_reference/mkref_cel... Copy code
nextflow run '<https://github.com/nf-core/scrnaseq>' -name condescending_descartes -params-file '<https://api.cloud.seqera.io/ephemeral/QevG8VwnlsSbhDs8zs4veQ.json>' -with-tower -r b7366482866bb64cf25a8c46940af2ab363698af -profile test_full