A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *scrnaseq/test_full* failed :crying_cat_face: *Run Name*
condescending_volhard *Duration*
2h 30m 47s *Status*
:x: Failed *Error Message*
```3:50PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
3:50PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0919fd14efdf5d915 instance-type=c6id.8xlarge
3:50PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
3:55PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
4:00PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
4:05PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
4:10PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
4:15PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
FUSION_GPU_USED=false
4:17PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: KPGJTTSEHY8K3637, HostID: An+Jt4m25zAMm478x81VLZ4zR7vvtxvGvpHKks2f1UPLndghyFTT8FePYQhZPHwu/O7JlKRuLhY=, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=584266 id=/s3/nf-core-awsmegatests/work/scrnaseq/work-b7366482866bb64cf25a8c46940af2ab363698af/dd/7e122ffcef07ef9b7689fe3841e42d/simpleaf_quant/af_map/map.rad length=11274289152 offset=134217728
4:17PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=584292 id=/s3/nf-core-awsmegatests/work/scrnaseq/work-b7366482866bb64cf25a8c46940af2ab363698af/dd/7e122ffcef07ef9b7689fe3841e42d/simpleaf_quant/af_map/map.rad.d8c6cscku2lc76n5mopg.12616466432.d8c68mcku2lc76n5mhag.chk length=134217728 offset=0
4:17PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=584297 id=/s3/nf-core-awsmegatests/work/scrnaseq/work-b7366482866bb64cf25a8c46940af2ab363698af/dd/7e122ffcef07ef9b7689fe38...``` *Command Line*
```nextflow run '<https://github.com/nf-core/scrnaseq>' -name condescending_volhard -params-file '<https://api.cloud.seqera.io/ephemeral/vjgGGywhoYT1WoCtWKnXOA.json>' -with-tower -r b7366482866bb64cf25a8c46940af2ab363698af -profile test_full``` May 28, 2026 at 4:17 PM