Good morning and thank you very much for the RNAsplice NF-Core workflow. I'm having a problem that I'm not sure how to correct and appreciate any help you can give. In an attempt to help myself, I downloaded the SUPPA software from GitHub and successfully ran suppa.py and generated the *.clustvec files, but can't get to work as part of the NF workflow. Here are the relevant parts (I think) of the log:

Dec-15 121244.699 [TaskFinalizer-5] ERROR nextflow.processor.TaskProcessor - Error executing process > 'NFCORE_RNASPLICERNASPLICESUPPA_SALMON:CLUSTEREVENTS_IOE (RoKD-CONTROL)'

Caused by:

Missing output file(s)

*.clustvec

expected by process

NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:CLUSTEREVENTS_IOE (RoKD-CONTROL)

Command executed:

suppa.py \

clusterEvents \

--dpsi KO-CONTROL_local_diffsplice.dpsi \

--psivec KO-CONTROL_local_diffsplice.psivec \

--dpsi-threshold 0.05 \

--eps 0.05 \

--metric euclidean \

--min-pts 20 \

--groups 1-2,3-4 \

--clustering DBSCAN \

-o RoKD-CONTROL_local_cluster

cat <<-END_VERSIONS > versions.yml

"NFCORE_RNASPLICERNASPLICESUPPA_SALMON:CLUSTEREVENTS_IOE":

suppa: $(python -c "import pkg_resources; print(pkg_resources.get_distribution('suppa').version)")

END_VERSIONS

Command exit status:

0

Command output:

Number of clustered events: 419/691 (60.636758%)

Cluster 0 contains 89 events

Cluster 1 contains 80 events

Cluster 2 contains 39 events

Cluster 5 contains 85 events

Cluster 3 contains 95 events

Cluster 4 contains 31 events

The RMSSTD score for cluster 0 is 0.193844

The RMSSTD score for cluster 1 is 0.152982

The RMSSTD score for cluster 2 is 0.107187

The RMSSTD score for cluster 5 is 0.178010

The RMSSTD score for cluster 3 is 0.163208

The RMSSTD score for cluster 4 is 0.189824

The average silhouette score is : 0.969885

Command error:

WARNING: Not virtualizing pid namespace by configuration

Again thank you for your help.

I'm seeing the same error

Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:CLUSTEREVENTS_IOI (MUT-CTRL)'

Caused by:
  Missing output file(s) `*.clustvec` expected by process `NFCORE_RNASPLICE:RNASPLICE:SUPPA_SALMON:CLUSTEREVENTS_IOI (MUT-CTRL)`

I'm running Nextflow 25.10.2 and rnasplice 1.0.4