@Júlia Mir I'm seeing issues in modules linting:

╭─ [✗] 1 Module Test Failed ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│                                  ╷                                               ╷                                                                                                                           │
│ Module name                      │ File path                                     │ Test message                                                                                                              │
│╶─────────────────────────────────┼───────────────────────────────────────────────┼──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╴│
│ picard/filtersamreads            │ modules/nf-core/picard/filtersamreads/main.nf │ Local copy of module does not match remote                                                                                │
│                                  ╵                                               ╵                                                                                                                           │
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯

I patched the module, but something seems not to be properly working, any idea?

can you run the command with

nf-core --verbose ...

?

nf-core --verbose lint

output

the patch seems to be working ok from the log output 🤔

I've removed the modules, and patched it again but same issue

do you have a link where I can see the module?

I'm working on https://github.com/nf-core/rnadnavar/pull/29

I can’t find the problem, maybe a bug in tools? I will have to look into it in more detail

ok

FYI, it has magically gone away after updating modules/subworkflows. No idea exactly what I have changed as I have done a lot of little changes doing the update

oh