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nf-core

Is there documentation of all the module lint tests somewhere?

<https://nf-co.re/docs/nf-core-tools/api_reference/2.14.1/module_lint_tests|https://nf-co.re/docs/nf-core-tools/api_reference/2.14.1/module_lint_tests>

Ah
> Apologies, the link you followed (<https://nf-co.re/docs/nf-core-tools/api_reference/2.14.1/module_lint_tests>) is broken and the page cannot be found.
Bit misleading but this is when you click on e.g. `main_nf` on that page

Or you can find it in the website under docs/api_reference

Cool I’ll take a look. Cleaning cache didn’t seem to change anything.
FWIW the link is just `&lt;a href="main_nf"&gt;main_nf&lt;/a&gt;` which to me looks odd.

Ah I see! there must be a problem with the links in that page. I have a meeting now but I can have a look later

Turns out someone actually flagged this issue with the pipeline lint tests page yesterday. So I added a bit more info in a comment
<https://github.com/nf-core/website/issues/2576>

Worth noting that this wasn’t quite the docs I was looking for, ideally I was looking for a list of the actual *tests* the linting applies (i.e. what can be disabled in the lint section of `.nf-core.yml`)

This should be what you want, there are docs about every check and when it can be skipped it is mentioned in the docs

I agree we need more documentation on the .nf-core.yml in general, this list of linting test could be one of the additions

Ohhh I always thought the specific checks in e.g. `main_nf` were somewhat configurable but now I’m realising it might only be the pipeline-level checks