Avani Bhojwani
07/09/2024, 11:03 AM"ribo_database_manifest": {
"type": "string",
"default": "${projectDir}/assets/rrna-db-defaults.txt",
"description": "Text file containing paths to fasta files (one per line) that will be used to create the database for SortMeRNA."
}
and my nextflow.config contains this:
ribo_database_manifest = "${projectDir}/assets/rrna-db-defaults.txt"
Error:
╭─ [✗] 1 Pipeline Test Failed ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ │
│ nextflow_config: Config default value incorrect: params.ribo_database_manifest is set as ${projectDir}/assets/rrna-db-defaults.txt in nextflow_schema.json but is │
│ /home/avani/nf-core-denovotranscript/assets/rrna-db-defaults.txt in nextflow.config. │
│ │
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯Arthur
07/09/2024, 1:59 PM${projectDir}/assets/rrna-db-defaults.txt