Any help with fixing this linting error when using...
# linting
a
Any help with fixing this linting error when using the sortmerna module? my nextflow_schema.json contains this:
Copy code
"ribo_database_manifest": {
                    "type": "string",
                    "default": "${projectDir}/assets/rrna-db-defaults.txt",
                    "description": "Text file containing paths to fasta files (one per line) that will be used to create the database for SortMeRNA."
                }
and my nextflow.config contains this:
Copy code
ribo_database_manifest     = "${projectDir}/assets/rrna-db-defaults.txt"
Error:
Copy code
╭─ [✗] 1 Pipeline Test Failed ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│                                                                                                                                                                                          │
│ nextflow_config: Config default value incorrect: params.ribo_database_manifest is set as ${projectDir}/assets/rrna-db-defaults.txt in nextflow_schema.json but is                        │
│ /home/avani/nf-core-denovotranscript/assets/rrna-db-defaults.txt in nextflow.config.                                                                                                     │
│                                                                                                                                                                                          │
╰──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
a
Using interpolated values in the schema does not work. i.e. can’t use
${projectDir}/assets/rrna-db-defaults.txt
👍 1