❌ sarek/test_full_germline_aws failed 😿 Run Name awesome_volhard Duration 3h 50m 45s Status ❌ Failed Error Message

(more omitted..)
1:19PM INF [seqera-fusion] fusion starting foreground=true goid=1 namespace=false pid=43 version=2.6.11-2aa52d6
1:19PM INF [seqera-fusion] OpenTelemetry collector initialized component=metrics format=json goid=1
1:19PM INF [seqera-fusion] selected filesystem frontend frontend=entryfs goid=1
1:19PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring goid=1 provider=aws-batch
1:19PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def goid=1 instance-id=i-0446351e87ac7acc2 instance-type=m6id.24xlarge
1:19PM INF [seqera-fusion] starting incremental snapshot timer goid=1 interval=300000
grep: write error: Broken pipe
2026-10-23 13:19:24.079133: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2026-10-23 13:19:24.079450: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-10-23 13:19:24.082149: I external/local_tsl/tsl/cuda/cudart_stub.cc:32] Could not find cuda drivers on your machine, GPU will not be used.
2026-10-23 13:19:24.117210: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX512F AVX512_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:246: FutureWarning: You are using a non-supported Python version (3.10.12). Google will not post any further updates to google.api_core supporting this Python version. Please upgrade to the latest Python version, or at least Python 3.11, and then update google.api_core.
  warnings.warn(message, FutureWarning)
2026-10-23 13:19:24.954201...

Command Line

nextflow run '<https://github.com/nf-core/sarek>' -name awesome_volhard -params-file '<https://api.cloud.seqera.io/ephemeral/Kb5O6Dw1x89U21PXt-Y2oQ.json>' -with-tower -r d0974c995c6b4786561086c4d3cf0e2d7e6ceeff -profile test_full_germline_aws

Oct 23, 2026 at 1:20 PM

Noooo