421 files changed, but most are mechanical or supporting changes. Here’s a suggested review breakdown: Skippable / low-priority review: 303 files • 107

modules/nf-core/**

for version/container bumps • 13

subworkflows/nf-core/**

for version bumps • 23 template/CI files • 37 pipeline-level tests and test configs • 123 local subworkflow/module test files, snapshots and fixtures Key files for review: 118 files • 44

subworkflows/local/**/main.nf

for subworkflow logic • 26

conf/modules/*.config

for configuration wiring • 8

modules/local/**

for new/changed local modules •

<http://main.nf|main.nf>

+

workflows/raredisease.nf

for core workflow wiring • 2

nextflow.config

files and

nextflow_schema.json

• ~10 documentation and asset/config files • ~6 images, README, CHANGELOG and CITATIONS

@Daniel Lundin I've addressed your comments in github.com/nf-core/raredisease/pull/1062 🙏