A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws_2 *Duration*
5h 38m 26s *Status*
:x: Failed *Error Message*
```3:28PM INF [seqera-fusion] OpenTelemetry collector initialized component=metrics format=json
3:28PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
3:28PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-03d322637502bfbfb instance-type=m6id.4xlarge
3:28PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
gzip: stdout: Broken pipe
2026-10-19 15:28:23 - INFO: Disabling --hgvs; using --offline and no FASTA file found
3:33PM INF [seqera-fusion] sending incremental snapshot signal (SIGUSR1)
3:33PM ERR [seqera-fusion] Failed to fetch entry size. This may indicate storage access issues. Check `error` field for details and report this issue if it persists. error="operation error S3: HeadObject, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=2499 operation=Readlink path=/s3/annotation-cache/vep_cache/116_GRCh38/homo_sapiens/116_GRCh38/X/21000001-22000000_reg.gz
-------------------- EXCEPTION --------------------
MSG: ERROR: 
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::deserialize_from_file_storable /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:134
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::deserialize_from_file /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:103
STACK Bio::EnsEMBL::VEP::AnnotationSource::Cache::BaseSerialized::get_features_by_regions_uncached /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource/Cache/BaseSerialized.pm:261
STACK Bio::EnsEMBL::VEP::AnnotationSource::get_all_features_by_InputBuffer /opt/wave/.pixi/envs/default/share/ensembl-vep-116.3-0/modules/Bio/EnsEMBL/VEP/AnnotationSource.pm:134
STACK Bio::EnsEMBL::VEP::AnnotationType::RegFeat::annotate_InputBuffer /opt/wave/.pixi/envs/default/...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws_2 -params-file '<https://api.cloud.seqera.io/ephemeral/kIknaViQw2nVY1q8qRFuwg.json>' -with-tower -r d0974c995c6b4786561086c4d3cf0e2d7e6ceeff -profile test_full_aws -resume 3de58c5a-3824-43bd-986e-e0a34c27a0f4``` Oct 19, 2026 at 3:33 PM