❌ sarek/test_full_germline_aws failed 😿 Run Name sarek_test_full_germline_aws_2 Duration 4h 8m 29s Status ❌ Failed Error Message

(more omitted..)
/usr/local/lib/python3.10/dist-packages/google/api_core/_python_version_support.py:246: FutureWarning: You are using a non-supported Python version (3.10.12). Google will not post any further updates to google.api_core supporting this Python version. Please upgrade to the latest Python version, or at least Python 3.11, and then update google.api_core.
  warnings.warn(message, FutureWarning)
2026-10-19 14:03:11.608785: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Could not find TensorRT
I1019 14:03:12.667909 140279914746304 run_deepvariant.py:623] Creating a directory for intermediate results in tmp
***** Intermediate results will be written to tmp in docker. ****
I1019 14:03:12.668712 140279914746304 run_deepvariant.py:894] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': '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...

Command Line

nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws_2 -params-file '<https://api.cloud.seqera.io/ephemeral/SJ4qUosyeEgJTLgxHYVpJA.json>' -with-tower -r d0974c995c6b4786561086c4d3cf0e2d7e6ceeff -profile test_full_germline_aws -resume 348d4d42-6416-4382-afaa-d46635675ec3

Oct 19, 2026 at 2:04 PM