A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Here we go - I haven't read in detail yet, just skimmed. Please let me know if it gets anything wrong or missed anything.

(just updated it to also include some things from a wishlist document I started a while ago, with notes from <@U03UCQH8FN2> <@U030S4355TJ> <@UE6D8290F> <@U030S4355TJ> <@UPC8CHDKQ> and others)

Something to add. I want to be able to test `-resume` works, i.e. tasks remain cached on a second run (nf-test runs tests in a fresh directory so cannot test `-resume`). And I want to be able to run some kind of corruption process so that I can check `-resume` correctly partially caches, and the rest downstream of the corruption reruns.

<@UNMC49PJS> there is a PR that I did a while ago that should do that: <https://github.com/askimed/nf-test/pull/339|github.com/askimed/nf-test/pull/339>

<https://insta.rs/docs/cli/#review> cool idea to update snapshots interactively