A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Anyone fancy a hackathon session to muck about with meta pipelines do some early bitching about any improvements we'd like? <https://github.com/nextflow-io/nextflow/pull/7213|github.com/nextflow-io/nextflow/pull/7213>

Working on rnaseq-diffab as an example: <https://github.com/pinin4fjords/rnaseq-diffabundance-meta/blob/main/main.nf|github.com/pinin4fjords/rnaseq-diffabundance-meta/blob/…/main.nf>

OK, am I too late or can I have this hackathon session?

<https://github.com/nf-core/website/pull/4447|github.com/nf-core/website/pull/4447>

Count me in too. My aim was to work on modules, but this interests me too

Yeah, if there’s a possibility of doing an online session on this, we might have a couple of people actively working on meta pipelines who have run into some issues and could join.

Sorry, really meant the in-person one, we don't have a hybrid setup this time round

If the issues you're mentioning are with Ben's new syntax, be sure to file issues on the Nextflow repo!

Note to self: <https://github.com/nf-core/tools/issues/4493|github.com/nf-core/tools/issues/4493>

<@UNMC49PJS> - wasn't quite sure where to track things for things, but for now I've put some hackathon issues up on the POC repo and added you as collaborator: <https://github.com/pinin4fjords/rnaseq-diffabundance-meta/issues|github.com/pinin4fjords/rnaseq-diffabundance-meta/issues>

Happy to do this somewhere in the nf-core org instead if that works better