Jim Downie
09/17/2026, 2:23 PMtest("homo_sapiens - pacbio - hifi - fastq - stub") {
options "-stub"
when {
params {
module_args = '--hifi'
}
process {
"""
input[0] = [
[ id:'test_stub' ],
file(params.modules_testdata_base_path + 'genomics/homo_sapiens/pacbio/fastq/test_hifi.fastq.gz', checkIfExists:true)
]
"""
}
}
then {
assertAll(
{ assert process.success },
{ assert snapshot(sanitizeOutput(process.out, ignoreKeys: ["results"])) }
)
}
}Jim Downie
09/17/2026, 2:27 PMprocess.out exists, I can print itJim Downie
09/17/2026, 2:27 PM.match() 🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️🤦♂️