Hello! I am using nf-core/mag with nanopore long-r...
# mag
s
Hello! I am using nf-core/mag with nanopore long-read data. I have a question about minimum read lengths. I see in the pipeline QC parameters that the --longreads_min_length is set to default: 1000. Does this meant that reads <1000 bases are skipped just for the QC steps, or are reads <1000 skipped for all the following steps in the pipeline? thank you!
j
Reads less than this length will be removed from the dataset during QC, and will not be available in downstream processes like assembly
s
thanks!