Hi all, I have worked along with Claude to fix the failing tests for the nf-core/isoseq release. I discovered the conda lock file which solve the problem. I still one red download test, but it seems to be an artefact of previous templates. It would be very nice I could release the version before I finish writing the RNA Bioinformatics book chapter in September 🙏. I happy take code review! github.com/nf-core/isoseq/pull/62

DEADLINE?

The chapter must be deliver for September , no exact date have been given.

ok, on it then

Thanks for your time ^^

Nice work

I'm happy to read that 🙂 Until my recent commits, I mainly done the work without AI.^^ For the templates merges, I have done that along the time, so that was OK to handle 🙂 I'll have a look to your comments soon, I keep writing while I'm motivated! Thanks again for your time!

Some of them (about comments or indentation don't really need to be fixed, it's just it'll look nicer). The others are more important, mainly the specific conda lock profile, that I think is not really needed

That"s the one of the part I have done with Claude xD The problem is that conda dependencies resolving lands on different program versions from the singularity images which this lead to different md5sums. I'll have a look 😉

for me these conf/containers_*.config are all you should need

OK I'll do that tomorrow and let you know !

@Julian Flesch any idea about this https://github.com/nf-core/isoseq/pull/62/changes/a23347b9786fec901a9878beeb63860b2ce45c4d..c6749e9049925c269b32105053086f1aa106eb7c#r3852518284

Hi Maxime, when you have time, can we finish the review?

On it, thanks for the reminder

It seems you are trying to sell me something xD Many thanks for your time!