Can I get a review on github.com/nf-core/sarek/pull/2257. It looks huge at 449 files. Before you you walk away, it's so much because the modules are completed migrated to using topics and a lot of strict syntax fixes (Channel -> channel,

it

replacements etc). In terms of actual change we got: • Parabricks haplotypecaller • Varlociraptor/filterfdr • Bug fix for inputs and one for normlaizing vcfs • 3 template updates Because it's mostly module bumps, most of the files can also be ignored for review. I am doing the version bump ceremony now and running the full size tests to validate it all.

I'm working tomorrow, Wed, but then I'm on holiday for the rest of the week and can't approve until Monday.

thanks a lot! I'll focus on finishing your review tomorrow and then look at the things you flagged