Hi, does anyone else run nextflow on JupyterLab via Climb? I've not used these before and struggling a bit. thanks

Is this what you mean by Climb? https://docs.climb.ac.uk/walkthroughs/nextflow-custom-workflows/nextflow-custom/. It seems one might need someone familiar with running nextflow through kubernetes. You'll likely get better help with that on the Nextflow slack ( assuming that's what you meant )

It sounds like a nice setup: https://docs.climb.ac.uk/notebook-servers/using-nextflow/

Yes it is. I'm used to using HPC via my institute so this is unfamiliar territory. I'm mainly struggling with the set up and if I'm running things in the most effective way

Also maybe worth getting in touch with the people running the system, from the docs it sounds like they are familiar with Nextflow and they'll have the most relevant experience with that system.