A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hi! Does anyone know of a case where a pipeline has two modules with the same name but use different containers?

I don't but what would be the use case here?

I was thinking about edge cases for seqera containers

for now we only handle nf-core modules, I think this shouldn't happen here :thinking_face: but just in case!

it could happen that two modules have the same name in modules from nf-core and a custom modules repo

That's certainly a possibility, although I've not seen that kind of thing actually used. The pipeline tends to use one or the other if both are present. For example rather than patch an nf-core module, they've made a local version instead by copy-pasting.