Hello! I am seeing the following error when testin...
# pipeline-maintainers
z
Hello! I am seeing the following error when testing a pipeline on github actions indicating that the runner is out of space. The pipeline is large and has many dependencies. Any ideas on how to solve this? Thanks! docker: failed to register layer: write /opt/conda/lib/python3.14/pydoc_data/__pycache__/topics.cpython-314.pyc: no space left on device https://github.com/nf-core/pathogensurveillance/actions/runs/21022292547/job/60439302804?pr=176
j
You have to find ways to minimise the footprint of the run unfortauntely, in other #C070369GP7T pipelines we've done the following: • Smaller test data • Make mini 'mock' databases rather than use full ones • Split up tests so they start at different points
m
There is also a possibility of larger runners...
z
ok, thanks for the advice! I might try to have it run just a subset of the pipeline. This data set is already so small much of the pipeline is skipped automatically due to lack of data. Is the larger runner something I can configure in
.github
or is that something you have to configure on your end?
got it passing by skipping part of the pipeline that wasn't even contributing to the results anyway due to the unrealistically small data subset. Thanks!