Sorry to be blowing up this chat... Just one more quick comment for now. I contacted Sentieon to get an academic license so that I could try their TNScope for somatic CNV calling, but according to Sentieon, it can't be used for that purpose. I'm not sure if the

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is the only piece of documentation that needs to be updated so I'll leave it to the Sarek pros to adjust this.

oh, probably just an overlook from our side, sorry about that