I am wondering if there is a way to view the param...
# seqera-platform-community-help
m
I am wondering if there is a way to view the params files outside the GUI. Example
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nextflow run '<https://github.com/sanger-tol/ascc>' -name hungry_kare -params-file '<https://api.cloud.seqera.io/ephemeral/4Vqh-LkZt5PO0OMmjVNciA.json>' -with-tower -r 0.5.3 -profile singularity,test -dump-hashes
I’m trying to debug a pipeline but I literally cannot see
<https://api.cloud.seqera.io/ephemeral/4Vqh-LkZt5PO0OMmjVNciA.json>
unless I open up the Seqera Platform GUI, click “Relaunch” and then see what JSON parameters my pipeline has. Trying to access the file I get an HTTP error
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wget <https://api.cloud.seqera.io/ephemeral/4Vqh-LkZt5PO0OMmjVNciA.json>
--2026-02-02 14:38:48--  <https://api.cloud.seqera.io/ephemeral/4Vqh-LkZt5PO0OMmjVNciA.json>
Resolving <http://api.cloud.seqera.io|api.cloud.seqera.io> (<http://api.cloud.seqera.io|api.cloud.seqera.io>)... 35.179.197.5, 3.11.38.17, 18.175.79.222
Connecting to <http://api.cloud.seqera.io|api.cloud.seqera.io> (<http://api.cloud.seqera.io|api.cloud.seqera.io>)|35.179.197.5|:443... connected.
HTTP request sent, awaiting response... 403 Forbidden
2026-02-02 14:38:49 ERROR 403: Forbidden.
I can’t open it even from the Seqera website too when I’m logged in. I feel like if you have a
TOWER_ACCESS_TOKEN
, you should be able to view this file somehow in the terminal no? Maybe there is a way but I just don’t know how to do it. I can’t figure it out with the
tower-cli
tool as well. Does anyone know how to view these params files?
g
👋 The ephemeral endpoint is a single use endpoint to pass sensitive configuration to Nextflow , it is not reusable and is not meant for general consumption The resolved configuration is viewable by querying the workflow api endpoint for your pipeline.
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<https://api.cloud.seqera.io/workflow/:workflowId>
https://docs.seqera.io/platform-api/describe-workflow Using Seqera Community showcase for example , you can see some of these details here. https://cloud.seqera.io/api/workflow/5mNVSRTNmPGyre/launch?workspaceId=40230138858677
m
Ah thank you. Is there a way to see it using the
tower-cli
?
g
I have not personally tested however in our upcoming docs release there is mention of passing
--params
to
tw runs
to display this info.
tw runs --id $pipelineid --params
m
And is the bearer token is what? The tower access token?
g
yes
m
Perfect thank you
g
Okay this worked.
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tw runs  view -w 40230138858677 --id cUmwRrN1TZc88 --params
m
Amazing thank you.
It works for all of my pipelines except this one:
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tw runs view --id 4qUEm8646Ysvjs --params 

  Run at user workspace:


    General
    ---------------------+--------------------------------------
     ID                  | 4qUEm8646Ysvjs                       
     Operation ID        | 45139809                             
     Run name            | adoring_mclean                       
     Status              | SUBMITTED                            
     Starting date       | No date reported                     
     Commit ID           | No commit ID reported                
     Session ID          | d97ceb58-d800-45d8-b95f-e981cff190a8 
     Username            | markpampuch                          
     Workdir             | /ibex/project/c2303/work             
     Container           | No container was reported            
     Executors           | No executors were reported           
     Compute Environment | IBEX                                 
     Nextflow Version    | No Nextflow version reported         
     Labels              | No labels reported in workspace      
java.lang.NullPointerException
	at io.seqera.tower.cli.responses.runs.RunView.toString(RunView.java:163)
	at io.seqera.tower.cli.utils.ResponseHelper.outputFormat(ResponseHelper.java:54)
	at io.seqera.tower.cli.commands.AbstractApiCmd.call(AbstractApiCmd.java:577)
	at io.seqera.tower.cli.commands.AbstractApiCmd.call(AbstractApiCmd.java:90)
	at picocli.CommandLine.executeUserObject(CommandLine.java:1953)
	at picocli.CommandLine.access$1300(CommandLine.java:145)
	at picocli.CommandLine$RunLast.executeUserObjectOfLastSubcommandWithSameParent(CommandLine.java:2358)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2352)
	at picocli.CommandLine$RunLast.handle(CommandLine.java:2314)
	at picocli.CommandLine$AbstractParseResultHandler.execute(CommandLine.java:2179)
	at picocli.CommandLine$RunLast.execute(CommandLine.java:2316)
	at picocli.CommandLine.execute(CommandLine.java:2078)
	at io.seqera.tower.cli.Tower.main(Tower.java:103)
	at java.base@21.0.8/java.lang.invoke.LambdaForm$DMH/sa346b79c.invokeStaticInit(LambdaForm$DMH)
g
May be best checking the API directly , you can also inspect the web-console there may be something in the params breaking the response.
m
For some reason this pipeline is currently running but it never communicates with Seqera Platoform
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$ squeue -u $USER -o "%.8i %.70j %.8u %.2t %.8M %.5D %R %Z"

   JOBID                                                                   NAME     USER ST     TIME NODES NODELIST(REASON) WORK_DIR
45139809                                             nf-workflow-4qUEm8646Ysvjs   pampum  R    47:47     1 cn605-27-l /ibex/scratch/projects/c2303/.tower-launches
45140689 nf-SANGERTOL_ASCC_ASCC_ORGANELLAR_RUN_VECSCREEN_NCBITOOLS_VECSCREEN_(a   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/6e/2a73c31a927b45956f864ee604d0d4
45140690 nf-SANGERTOL_ASCC_ASCC_ORGANELLAR_ESSENTIAL_JOBS_GENERATE_GENOME_GET_L   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/19/e21a2920870575e0cd9e697cbf4b9e
45140691 nf-SANGERTOL_ASCC_ASCC_ORGANELLAR_ESSENTIAL_JOBS_GENERATE_GENOME_GNU_S   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/bf/ff21f4d3d271db98787a611f9936e0
45140692 nf-SANGERTOL_ASCC_ASCC_ORGANELLAR_RUN_NT_KRAKEN_GET_LINEAGE_FOR_KRAKEN   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/59/c319f4ed1bb601422d7b41082a3d64
45140694 nf-SANGERTOL_ASCC_ASCC_ORGANELLAR_RUN_FCSGX_FCSGX_RUNGX_(asccTinyTest_   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/97/0c4bb630c0e760fc8eb4e29a8e237c
45140617   nf-SANGERTOL_ASCC_ASCC_GENOMIC_TIARA_TIARA_(asccTinyTest_V2_PRIMARY)   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/11/f1f78f301860443107f2afcd1a1826
45140618 nf-PIPELINE_INITIALISATION_PREPARE_BLASTDB_BLAST_MAKEBLASTDB_(BARCODE_   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/89/e8361b60dc09ed97fea6b2e7b05e6c
45140615 nf-SANGERTOL_ASCC_ASCC_GENOMIC_GET_KMERS_PROFILE_GET_KMER_COUNTS_(ascc   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/44/adf5cbea921df8e4e3193e097ece8c
45140616 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_NT_KRAKEN_KRAKEN2_KRAKEN2_(asccTiny   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/64/3f0f235886bf5d45fe5052891caaa1
45140604 nf-SANGERTOL_ASCC_ASCC_GENOMIC_EXTRACT_NT_BLAST_SEQKIT_SLIDING_(asccTi   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/8b/f83747f8c00f9e900ebb26ee936ce9
45140605 nf-SANGERTOL_ASCC_ASCC_GENOMIC_MITO_ORGANELLAR_BLAST_SED_SED_(asccTiny   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/60/b1080094d98390142d055522fc6a60
45140606 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSADAPTOR_FCS_FCSADAPTOR_PROK_(asc   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/06/105d542e4241b71b29c23cb7b65747
45140607 nf-SANGERTOL_ASCC_ASCC_GENOMIC_UP_DIAMOND_SEQKIT_SLIDING_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/04/5e89867b3524dd02ef42884857234d
45140608 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSADAPTOR_FCS_FCSADAPTOR_EUK_(ascc   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/ad/937ef2c97e223c26f51ca0a59707d5
45140609 nf-SANGERTOL_ASCC_ASCC_GENOMIC_ESSENTIAL_JOBS_TRAILINGNS_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/1a/ad3824b956ed5747ac6f832ead9d8e
45140610 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_VECSCREEN_CHUNK_ASSEMBLY_FOR_VECSCR   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/15/c97dd03d63eb21a8a640b1e9710796
45140611 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSGX_SAMTOOLS_DICT_(asccTinyTest_V   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/d0/c503af15f88971000e8e3ee1cc792f
45140612 nf-SANGERTOL_ASCC_ASCC_GENOMIC_ESSENTIAL_JOBS_GC_CONTENT_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/ca/874c6f556f662a85e18df5a3540bdc
45140613 nf-SANGERTOL_ASCC_ASCC_GENOMIC_NR_DIAMOND_SEQKIT_SLIDING_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/80/6057092f4947ebddaf8a1906cc7fa1
45140614 nf-SANGERTOL_ASCC_ASCC_GENOMIC_EXTRACT_NT_BLAST_SEQKIT_SLIDING_(asccTi   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/2d/146f32d83af36d34c6612a047d806f
45140603 nf-SANGERTOL_ASCC_ASCC_GENOMIC_ESSENTIAL_JOBS_TRAILINGNS_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/81/1cb931486075c5bd3e565c4bd4e35f
45140594 nf-SANGERTOL_ASCC_ASCC_GENOMIC_UP_DIAMOND_SEQKIT_SLIDING_(asccTinyTest   pampum PD     0:00     1 (Resources) /ibex/project/c2303/work/a0/c3d2721c6942ace6498d978fba19a3
45140595 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_VECSCREEN_CHUNK_ASSEMBLY_FOR_VECSCR   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/eb/250019f242ca6818f0395b648973bd
45140596 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSGX_SAMTOOLS_DICT_(asccTinyTest_V   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/aa/f6be11628b3f7d1da2c2609241b649
45140597 nf-SANGERTOL_ASCC_ASCC_GENOMIC_MITO_ORGANELLAR_BLAST_SED_SED_(asccTiny   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/1b/a8907ebeb42040050e7be715148d25
45140598 nf-SANGERTOL_ASCC_ASCC_GENOMIC_ESSENTIAL_JOBS_GENERATE_GENOME_SAMTOOLS   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/36/7be1539b45fff4908a7a96471fb3fd
45140599 nf-SANGERTOL_ASCC_ASCC_GENOMIC_GET_KMERS_PROFILE_GET_KMER_COUNTS_(ascc   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/1d/121f0c9a77ddf89232e0c9ac278a76
45140600 nf-SANGERTOL_ASCC_ASCC_GENOMIC_ESSENTIAL_JOBS_GC_CONTENT_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/44/5d2c7a8fa664d1521b1eba382a9d67
45140601 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_NT_KRAKEN_KRAKEN2_KRAKEN2_(asccTiny   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/53/06709130fc43b3b84c3e21bfdf2fad
45140602     nf-SANGERTOL_ASCC_ASCC_GENOMIC_TIARA_TIARA_(asccTinyTest_V2_HAPLO)   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/b5/bc4e5cab0fc8c1c92ecfab3f47ff94
45140770 nf-SANGERTOL_ASCC_ASCC_GENOMIC_NR_DIAMOND_DIAMOND_BLASTX_(asccTinyTest   pampum PD     0:00     1 (Priority) /ibex/project/c2303/work/10/fc33c26f0f56bf5618c9cfdca6f485
45140593 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSADAPTOR_FCS_FCSADAPTOR_EUK_(ascc   pampum  R     0:45     1 cn506-17-r /ibex/project/c2303/work/f2/48d14dbabf54fcee746d093d8d93fc
45140591 nf-SANGERTOL_ASCC_ASCC_GENOMIC_RUN_FCSADAPTOR_FCS_FCSADAPTOR_PROK_(asc   pampum  R     1:07     1 cn506-21-l /ibex/project/c2303/work/a8/3d869445d37fd3a9a9a02bcf9409b9
Not relevant to the initial problem in the thread I just think it’s very weird and I have no idea why this keeps happening
g
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curl '<https://cloud.seqera.io/api/workflow/cUmwRrN1TZc88/launch?workspaceId=40230138858677>' \
  -H 'accept: application/json, text/plain, */*' \
  -H 'authorization: Bearer YOUR_TOKEN_HERE' \
  -H 'content-type: application/json'
m
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curl '<https://cloud.seqera.io/api/workflow/4qUEm8646Ysvjs/launch>' \
  -H 'accept: application/json, text/plain, */*' \
  -H 'authorization: Bearer $TOWER_ACCESS_TOKEN' \
  -H 'content-type: application/json'
I got no output
Ah my bad. That was a shell expansion issue. Used single quotes instead of double quotes with
"-H 'authorization: Bearer $TOWER_ACCESS_TOKEN"
it worked for this pipeline
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curl '<https://cloud.seqera.io/api/workflow/3VZU2fr6jzVOAk/launch>' \
  -H 'accept: application/json, text/plain, */*' \
  -H "authorization: Bearer $TOWER_ACCESS_TOKEN" \
  -H 'content-type: application/json'
{"launch":{"id":"1GHb8DeGSU4sqdA6ckpeIb","computeEnv":{"id":"gDAwxc07GPN4xzFubkHb0","name":"IBEX","description":null,"platform":"slurm-platform","config":{"workDir":"$TW_AGENT_WORK","preRunScript":"module load singularity nextflow","postRunScript":null,"environment":[{"name":"NXF_OPTS","value":"'-Xms3G -Xmx5G'","head":true,"compute":false},{"name":"NXF_SINGULARITY_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR","head":true,"compute":false},{"name":"NXF_APPTAINER_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_APPTAINER_CACHEDIR","head":true,"compute":false},{"name":"NXF_WORK","value":"/ibex/scratch/projects/c2303/work","head":true,"compute":false},{"name":"SINGULARITY_BUILDDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/build","head":true,"compute":false},{"name":"SINGULARITY_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/cache","head":true,"compute":false},{"name":"SINGULARITY_TMPDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/tmp","head":true,"compute":false}],"nextflowConfig":"process {\n  executor = 'slurm'\n  clusterOptions = \"-p batch --time=1-00:00:00\"\nmemory = { 256.GB * Math.pow(2, task.attempt - 1) }\n    errorStrategy = { task.exitStatus in 137..140 ? 'retry' : 'ignore' }\n    maxRetries = 3\n}\nsingularity {\n      pullTimeout = '3 hours'\n   }\naws.client.anonymous = true // fixes S3 access issues on self-hosted runners\nworkflow {\n    failOnIgnore = true\n}","launchDir":"/ibex/scratch/projects/c2303/.tower-launches","userName":null,"hostName":null,"port":null,"headQueue":"batch","computeQueue":"batch","maxQueueSize":null,"headJobOptions":"--time=13-00:00:00 --cpus-per-task=1 --mem=5G","propagateHeadJobOptions":null,"discriminator":"slurm-platform"},"dateCreated":"2026-01-26T13:49:20Z","lastUpdated":"2026-01-27T07:12:25Z","lastUsed":"2026-02-02T11:21:46Z","deleted":null,"status":"AVAILABLE","message":null,"primary":null,"managedIdentityId":null,"credentialsId":"66xbslf42XlwzeG7CVmRMd","orgId":null,"workspaceId":null},"pipeline":"<https://github.com/sanger-tol/genomeassembly>","pipelineId":94594928658540,"workDir":"$TW_AGENT_WORK","revision":"dev","commitId":null,"sessionId":"35a8c51d-0585-4fa0-882a-44c72b98eb23","configProfiles":["singularity","kaust"],"userSecrets":[],"workspaceSecrets":[],"configText":"//////////\n// CUSTOM\n//////////\n\n// apptainer.enabled      = true\n// apptainer.autoMounts   = true\n// singularity.enabled    = false\n// singularity.autoMounts = false\n// docker.enabled         = false\n// podman.enabled         = false\n// shifter.enabled        = false\n// charliecloud.enabled   = false\n        \nprocess {\n\n    withName:'.*MITOHIFI.*' {\n        container = '/ibex/project/c2303/NXF_SINGULARITY_CACHEDIR/mitohifi-3.2.3.sif'\n    }\n\n    // General configurations\n    executor = 'slurm'\n    // errorStrategy = 'ignore'\n    \n    // cpus = 8\n    // time = '24.h'\n    // memory = '256.GB'\n\n    // Dynamic memory allocation with retry\n    memory = { 256.GB * Math.pow(2, task.attempt - 1) }\n    errorStrategy = { task.exitStatus in 137..140 ? 'retry' : 'ignore' }\n    maxRetries = 3\n\n\n    clusterOptions = '--partition=batch --mail-type=FAIL'\n    // clusterOptions = '--partition=batch --time=24:00:00 --cpus-per-task=8 --mem=200GB --mail-type=FAIL' // Old configuration. Delete at a later point if this is unneccessay. Kept in case above code doesn't work.\n    \n    \n    // resourceLimits = [\n    //    cpus: 4,\n    //    memory: '64.GB',\n    //    time: '6.h'\n    // ]\n    \n    // Process-specific configurations\n\n    withName: '.*MULTIQC.*' {\n    \tclusterOptions = '--partition=batch --time=24:00:00 --cpus-per-task=8 --mem=200GB --mail-type=ALL'\n    }\n    \n    // withName: SRATOOLS_PREFETCH {\n    //     ext.args = '--max-size 100g'\n    // }\n}\n\nsingularity.pullTimeout = \"3 hours\"\n// apptainer.pullTimeout = \"3 hours\"\n\nworkflow {\n    failOnIgnore = true\n}\nparams.input = \"/ibex/scratch/projects/c2303/20260115_assemble-wadi-zee-strains/INPUTS/for-54eff1f/Chlamydomonas_reinhardtii_AN3.yaml\"\nparams.outdir = \"/ibex/scratch/projects/c2303/20260115_assemble-wadi-zee-strains/OUTPUTS/20260202_112105/Chlamydomonas_reinhardtii_AN3\"\n\n// process {\n//   withName: '.*MULTIQC.*' {\n//       ext.args = '--max-size 100g'\n//   }\n// }\n","towerConfig":null,"paramsText":null,"preRunScript":"module load singularity nextflow","postRunScript":"#!/usr/bin/env bash\n# Post-run callback script generated by build_post_run_callback_script.sh\n# This script is executed by Tower after workflow completion and runs the actual post-run script\n\nbash \"/ibex/scratch/projects/c2303/20260115_assemble-wadi-zee-strains/TMP/Chlamydomonas_reinhardtii_AN3_20260202_112105.post_run_script.sh\"\n","mainScript":null,"entryName":null,"schemaName":null,"pipelineSchemaId":null,"resume":false,"pullLatest":false,"stubRun":false,"resumeDir":"/ibex/project/c2303/work","resumeCommitId":"54eff1f252ecb35ef85218978bc7149fc0514897","headJobMemoryMb":null,"headJobCpus":null,"optimizationId":null,"optimizationTargets":"","dateCreated":"2026-02-02T08:23:45Z"}}
For my problematic one it worked too! run
4qUEm8646Ysvjs
on my problematic pipeline
82692822042565
returned:
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curl '<https://cloud.seqera.io/api/workflow/4qUEm8646Ysvjs/launch>' \
  -H 'accept: application/json, text/plain, */*' \
  -H "authorization: Bearer $TOWER_ACCESS_TOKEN" \
  -H 'content-type: application/json'

{"launch":{"id":"hlFzWCrlV9775bB0ESFLu","computeEnv":{"id":"gDAwxc07GPN4xzFubkHb0","name":"IBEX","description":null,"platform":"slurm-platform","config":{"workDir":"$TW_AGENT_WORK","preRunScript":"module load singularity nextflow","postRunScript":null,"environment":[{"name":"NXF_OPTS","value":"'-Xms3G -Xmx5G'","head":true,"compute":false},{"name":"NXF_SINGULARITY_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR","head":true,"compute":false},{"name":"NXF_APPTAINER_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_APPTAINER_CACHEDIR","head":true,"compute":false},{"name":"NXF_WORK","value":"/ibex/scratch/projects/c2303/work","head":true,"compute":false},{"name":"SINGULARITY_BUILDDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/build","head":true,"compute":false},{"name":"SINGULARITY_CACHEDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/cache","head":true,"compute":false},{"name":"SINGULARITY_TMPDIR","value":"/ibex/scratch/projects/c2303/NXF_SINGULARITY_CACHEDIR/tmp","head":true,"compute":false}],"nextflowConfig":"process {\n  executor = 'slurm'\n  clusterOptions = \"-p batch --time=1-00:00:00\"\nmemory = { 256.GB * Math.pow(2, task.attempt - 1) }\n    errorStrategy = { task.exitStatus in 137..140 ? 'retry' : 'ignore' }\n    maxRetries = 3\n}\nsingularity {\n      pullTimeout = '3 hours'\n   }\naws.client.anonymous = true // fixes S3 access issues on self-hosted runners\nworkflow {\n    failOnIgnore = true\n}","launchDir":"/ibex/scratch/projects/c2303/.tower-launches","userName":null,"hostName":null,"port":null,"headQueue":"batch","computeQueue":"batch","maxQueueSize":null,"headJobOptions":"--time=13-00:00:00 --cpus-per-task=1 --mem=5G","propagateHeadJobOptions":null,"discriminator":"slurm-platform"},"dateCreated":"2026-01-26T13:49:20Z","lastUpdated":"2026-01-27T07:12:25Z","lastUsed":"2026-02-02T11:21:46Z","deleted":null,"status":"AVAILABLE","message":null,"primary":null,"managedIdentityId":null,"credentialsId":"66xbslf42XlwzeG7CVmRMd","orgId":null,"workspaceId":null},"pipeline":"<https://github.com/sanger-tol/ascc>","pipelineId":82692822042565,"workDir":"$TW_AGENT_WORK","revision":"0.5.3","commitId":null,"sessionId":"d97ceb58-d800-45d8-b95f-e981cff190a8","configProfiles":["singularity","test"],"userSecrets":[],"workspaceSecrets":[],"configText":"lineage.enabled = true\nprocess {\n\n    resourceLimits = [\n        cpus: 32,\n        memory: '256',\n        time: '23.h'\n    ]\n\n  executor = 'slurm'\n  clusterOptions = \"-p batch --time=1-00:00:00\"\nsingularity {\n      pullTimeout = '3 hours'\n   }\n    memory = { 256.GB * Math.pow(2, task.attempt - 1) }\n    errorStrategy = { task.exitStatus in 137..140 ? 'retry' : 'ignore' }\n    maxRetries = 3\n}\naws.client.anonymous = true // fixes S3 access issues on self-hosted runners\nworkflow {\n    failOnIgnore = true\n}","towerConfig":null,"paramsText":"{\"ncbi_ranked_lineage_path\":\"/ibex/reference/KSL/blobtools/NCBI_taxdump/rankedlineage.dmp\",\"diamond_nr_database_path\":\"/ibex/scratch/projects/c2303/DATABASES/NCBI_nr/ncbi_nr.dmnd\",\"diamond_uniprot_database_path\":\"/ibex/scratch/projects/c2303/DATABASES/UniProt/reference_proteomes.dmnd\",\"vecscreen_database_path\":\"/ibex/scratch/projects/c2303/DATABASES/VecScreen/ASCC\",\"outdir\":\"/ibex/project/c2303/20251109_ascc_SP_test/OUTPUTS/TEST/20260127_155823\",\"nt_database_path\":\"/ibex/scratch/projects/c2303/DATABASES/NCBI_nt/NCBI_nt\",\"nt_database_prefix\":\"nt\",\"ncbi_taxonomy_path\":\"/ibex/reference/KSL/blobtools/NCBI_taxdump\",\"nt_kraken_database_path\":\"/ibex/project/c2303/DATABASES/kraken2/standard_8_20251015\",\"custom_config_base\":\"<https://raw.githubusercontent.com/nf-core/configs/master>\",\"profile_name\":null,\"busco_lineages\":null,\"max_memory\":\"256.GB\",\"fcs_gx_database_path\":\"/ibex/project/c2303/DATABASES/FCS-GX/gxdb\",\"busco_lineages_folder\":\"/ibex/scratch/projects/c2303/DATABASES/BUSCO/v5/lineages\"}","preRunScript":"module load singularity nextflow\nexport NXF_CLI_OPTS='-dump-hashes'","postRunScript":null,"mainScript":null,"entryName":null,"schemaName":null,"pipelineSchemaId":null,"resume":false,"pullLatest":false,"stubRun":false,"resumeDir":"/ibex/project/c2303/work","resumeCommitId":null,"headJobMemoryMb":null,"headJobCpus":null,"optimizationId":null,"optimizationTargets":"","dateCreated":"2026-02-02T11:21:33Z"}}
So for some reason, the Seqera Platform GUI and
tower-cli
can’t fetch any information on pipeline id
82692822042565
(https://github.com/sanger-tol/ascc) but I can see the information with the Platform API. What could be going on?
Upon further inspection: The API output is only showing the top level congfiguration:
Copy code
curl '<https://cloud.seqera.io/api/workflow/4qUEm8646Ysvjs/launch>' \
  -H 'accept: application/json, text/plain, */*' \
  -H "authorization: Bearer $TOWER_ACCESS_TOKEN" \
  -H 'content-type: application/json' | jq
This isn’t the same as the resolved configuration that you get with
tw runs  view  --id ID --params