A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

anything team infrastructure could do to ease the pain?

Topics are very annoying that you have to include the command that generates the topic

which is a PITA when there are any quote marks

nf-core modules lint --fix is almost never helpful for me

what if you just add it in the <http://main.nf|main.nf> and run `nf-core m lint $module --fix` this should add them

ah, okay. also not with the latest dev version (from yesterday)?

If there is an indentation wrong, it'll just give a useless error

I still don't see the point of having the command used in the meta.yml

so we can in theory go easily from meta.yml to <http://main.nf|main.nf> and the other way around (for automation things)

> If there is an indentation wrong, it'll just give a useless error
you mean the schema validation error? I could try to catch  that one and guess what is going wrong

I'll try and give you some examples later, need to actually do some work now :wink:

<@UQZG2UCF3>, any idea on this one:
`meta_yml_valid: The meta.yml of the module sentieon/bwamem is not valid: None is not of type 'object'. Check the entry for deque([0, '${task.process}']).`    
See: <https://github.com/nf-core/modules/pull/9697/files>