I am thinking about the “FASTQ files” and “BAM files” labeling, I would like to enable unaligned BAM input at some point so then this labeling would be a bit confussing. How about: “”FASTQ files” --> “Raw sequence QC”/“Sequence QC”, “BAM files” --> “Reference mapped QC”/“Mapped QC”

updated with latest suggestions from you and @mashehu : https://github.com/nf-core/seqinspector/pull/225

Great, I am happy with that 🙂