Jonathan Rondeau-Leclaire
06/30/2026, 12:53 PMwithName: 'NFCORE_MAG:MAG:ALE' {
cpus = 1
memory = { params.coassemble_group ? 30.GB * task.attempt : 18.GB * task.attempt }
}
or something like this, which would minimize the repeats. Obviously that's based on a single project but since it has 240 samples with extremely variable sequencing depth (good ol' human DNA in saliva samples...) I think it's a good place to start, because nearly 100% of my jobs had retries (and half had 2 retries) for single assembly.
Edit: I guess mag stands for magnifier now 🔍 🙃Diego Alvarez Saravia
06/30/2026, 3:35 PMDiego Alvarez Saravia
06/30/2026, 3:37 PMJonathan Rondeau-Leclaire
06/30/2026, 5:15 PM