Megahit starts all jobs over every time despite the -resume flag. From what I understand the only way to prevent this is to fix megahit_fix_cpu_1: true but is there a way to force megahit to resume with more cpus? I know it's not fully reproducible that way, but tbh I don't really care at this point I just want to make it through the pipeline.

Mmm... Strange. I'm running several samples now and I have not seem issues with resume. As you can see, in my testing, not a single assembly was dropped from cache.

i noticed that sometimes it does, sometimes it doesn't, and haven't figured out what I did different between these runs. I'll try this and try to figure it out