:x: sarek/test_full_germline_aws failed :crying_ca...
# sarek_devf
Full test notifications
06/12/2026, 8:02 AM❌ sarek/test_full_germline_aws failed 😿 Run Name
sarek_test_full_germline_aws_2 Duration
8m 10s Status
❌ Failed Error Message
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(more omitted..)
time seq 0 11 | parallel -q --halt 2 --line-buffer /opt/deepvariant/bin/make_examples --mode calling --ref "Homo_sapiens_assembly38.fasta" --reads "NA12878.recal.cram" --examples "tmp/make_examples.tfrecord@12.gz" --checkpoint "/opt/models/wgs" --call_small_model_examples --gvcf "tmp/gvcf.tfrecord@12.gz" --regions "chr4_190173122-190204555.bed" --sample_name "NA12878" --small_model_indel_gq_threshold "28" --small_model_snp_gq_threshold "20" --small_model_vaf_context_window_size "51" --track_ref_reads --trained_small_model_path "/opt/smallmodels/wgs" --task {}
I0612 08:01:01.055109 140536305390016 run_deepvariant.py:838] env = {'R_PROFILE_USER': '/.Rprofile', 'FUSION_LICENSE_TOKEN': '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.eyJpc3MiOiJDTj1TZXFlcmEgQ0EsT1U9U2VxZXJhIENBLE89... Copy code
nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_germline_aws_2 -params-file '<https://api.cloud.seqera.io/ephemeral/Yj35mvE2n8F9yKkdkzlQow.json>' -with-tower -r 375c449933215d19e26f645fd61c5bc38580e2da -profile test_full_germline_aws -resume f26ab704-e630-4ff0-96b8-1d08771c7354