A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *sarek/test_full_aws* failed :crying_cat_face: *Run Name*
sarek_test_full_aws *Duration*
8h 49m 58s *Status*
:x: Failed *Error Message*
```1:27AM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
1:27AM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-05a011edb6f3df210 instance-type=c6id.32xlarge
1:27AM INF [seqera-fusion] starting incremental snapshot timer interval=300000
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics
Attaching package: ‘generics’
The following objects are masked from ‘package:base’:
    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
    IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
    anyDuplicated, aperm, append, as.data.frame, basename, cbind,
    colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
    get, grep, grepl, is.unsorted, lapply, Map, mapply, match, mget,
    order, paste, pmax, <http://pmax.int|pmax.int>, pmin, <http://pmin.int|pmin.int>, Position, rank,
    rbind, Reduce, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following object is masked from ‘package:utils’:
    findMatches
The following objects are masked from ‘package:base’:
    expand.grid, I, unname
Loading required package: IRanges
Loading required package: Seqinfo
Error in if (class(resultks) == "try-error") return(list(statistic = NA,  : 
  the condition has length &gt; 1
Calls: KS
In addition: Warning message:
In ks.test.default(values, score(normals)) :
  p-value will be approximate in the presence of ties
Execution halted
FUSION_GPU_USED=false
Fusion Info:
    available_disk: start:7.5TB, min:7.5TB, max:7.5TB, end:7.5TB
    clone_namespace: false
    download: 16.48MB, drops:0, skip:0, sync:0, req:2
    fusion_version: 2.5.12-8ea351d
    kernel_version: 6.1
    max_open_files: 1048576
    uplo...``` *Command Line*
```nextflow run '<https://github.com/nf-core/sarek>' -name sarek_test_full_aws -params-file '<https://api.cloud.seqera.io/ephemeral/nyY6_8mmW9MImvRlLA-ZvQ.json>' -with-tower -r 375c449933215d19e26f645fd61c5bc38580e2da -profile test_full_aws``` Jun 12, 2026 at 1:27 AM