Hi all, I want to reopen this discussion
https://nfcore.slack.com/archives/C02K5GX2W93/p1776940829275139 After working deeper on the pipeline bacmodel, I'm not entirely convinced that it is the best home for METABOLIC tool. Bacmodel metabolic profiling is centered around GEMs, while METABOLIC focuses more on trait profiling than on reconstructing simulation-ready models.