A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *createpanelrefs/test_full* failed :crying_cat_face: *Run Name*
pensive_mclean *Duration*
1h 5m 55s *Status*
:x: Failed *Error Message*
```(more omitted..)
14:40:08.675 INFO  NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/opt/conda/share/gatk4-4.6.2.0-0/gatk-package-4.6.2.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
14:40:08.768 INFO  GenomicsDBImport - ------------------------------------------------------------
14:40:08.770 INFO  GenomicsDBImport - The Genome Analysis Toolkit (GATK) v4.6.2.0
14:40:08.771 INFO  GenomicsDBImport - For support and documentation go to <https://software.broadinstitute.org/gatk/>
14:40:08.771 INFO  GenomicsDBImport - Executing as root@ip-172-31-28-229.eu-west-1.compute.internal on Linux v6.1.166-197.305.amzn2023.x86_64 amd64
14:40:08.771 INFO  GenomicsDBImport - Java runtime: OpenJDK 64-Bit Server VM v17.0.11-internal+0-adhoc..src
14:40:08.771 INFO  GenomicsDBImport - Start Date/Time: June 3, 2026 at 2:40:08 PM GMT
14:40:08.771 INFO  GenomicsDBImport - ------------------------------------------------------------
14:40:08.771 INFO  GenomicsDBImport - ------------------------------------------------------------
14:40:08.772 INFO  GenomicsDBImport - HTSJDK Version: 4.2.0
14:40:08.772 INFO  GenomicsDBImport - Picard Version: 3.4.0
14:40:08.772 INFO  GenomicsDBImport - Built for Spark Version: 3.5.0
14:40:08.774 INFO  GenomicsDBImport - HTSJDK Defaults.COMPRESSION_LEVEL : 2
14:40:08.774 INFO  GenomicsDBImport - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
14:40:08.774 INFO  GenomicsDBImport - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
14:40:08.774 INFO  GenomicsDBImport - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
14:40:08.774 INFO  GenomicsDBImport - Deflater: IntelDeflater
14:40:08.774 INFO  GenomicsDBImport - Inflater: IntelInflater
14:40:08.774 INFO  GenomicsDBImport - GCS max retries/reopens: 20
14:40:08.774 INFO  GenomicsDBImport - Requester pays: disabled
14:40:08.775 INFO  GenomicsDBImport - Initializing engine
14:40:09.114 INFO  FeatureManager - Using codec BEDCodec to read file file:///fusion/s3/nf-core-aw...``` *Command Line*
```nextflow run '<https://github.com/nf-core/createpanelrefs>' -name pensive_mclean -params-file '<https://api.cloud.seqera.io/ephemeral/QTfJX5MCeHz-p8D1n8EKzQ.json>' -with-tower -r 4747dcb35ee6b1e24efcbe38b5e516375e186101 -profile test_full``` Jun 3, 2026 at 2:40 PM