❌ createpanelrefs/test_full failed 😿 Run Name spontaneous_cantor Duration 24.7s Status ❌ Failed Error Message

The following invalid input values have been detected:

* --input (<https://raw.githubusercontent.com/nf-core/test-datasets/createpanelrefs/csv/1.0/recal_cram_sarek.csv>): Validation of file failed:
	-> Entry 1: Error for field 'crai' (<s3://nf-core-awsmegatests/sarek/results-4bd2948f98c5bf7b785c91cf6708fffccab...ull_germline_aws/preprocessing/recalibrated/NA12878/NA12878.recal.cram.crai>): the file or directory '<s3://nf-core-awsmegatests/sarek/results-4bd2948f98c5bf7b785c91cf6708fffccab25467/test_full_germline_aws/preprocessing/recalibrated/NA12878/NA12878.recal.cram.crai>' does not exist (CRAM index file cannot contain spaces and must have extension '.crai')
	-> Entry 2: Error for field 'crai' (<s3://nf-core-awsmegatests/sarek/results-4bd2948f98c5bf7b785c91cf6708fffccab.../test_full_aws/preprocessing/recalibrated/HCC1395N/HCC1395N.recal.cram.crai>): the file or directory '<s3://nf-core-awsmegatests/sarek/results-4bd2948f98c5bf7b785c91cf6708fffccab25467/test_full_aws/preprocessing/recalibrated/HCC1395N/HCC1395N.recal.cram.crai>' does not exist (CRAM index file cannot contain spaces and must have extension '.crai')

Command Line

nextflow run '<https://github.com/nf-core/createpanelrefs>' -name spontaneous_cantor -params-file '<https://api.cloud.seqera.io/ephemeral/KysJ0eSZPgGhAo2q9WsrXA.json>' -with-tower -r 8e82d2b5a0fa3cdf1c8ef0da536136d6584718dd -profile test_full

May 19, 2026 at 3:41 PM