A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *rnavar/test_full* failed :crying_cat_face: *Run Name*
stoic_dubinsky *Duration*
8m 36s *Status*
:x: Failed *Error Message*
```1:53PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
1:53PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-0a6be31d7fe8eea4c instance-type=c6id.2xlarge
1:53PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
FUSION_GPU_USED=false
1:54PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: H2M58YMR98N0V0X3, HostID: qGx/2jv9fzRDdu65JgvKn3Jk0wJs6ymBKWscIlImKmCWjkP/INi5ivcLMmumMn6xmgwWfqzXXHwXfcv55QOIoq3B4aaQmzim, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=34467 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/5b/4d86622d4e1c63d44ca00e8163338c/GM12878_REP2_1.merged.fastq.gz length=7247757312 offset=0
1:54PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=34471 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/5b/4d86622d4e1c63d44ca00e8163338c/GM12878_REP2_1.merged.fastq.gz.d8fe0u64pm9s7691m290.7650410496.d8fe0rm4pm9s7691m0s0.chk length=57636110 offset=0
1:54PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=34468 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/5b/4d86622d4e1c63d44ca00e8163338c/GM12878_REP2_1.merged.fastq.gz.d8fe0tu4pm9s7691m27g.7247757312.d8fe0rm4pm9s7691m0s0.chk length=134217728 offset=0
1:54PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=34469 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/5b/4d86622d4e1c63d44ca00e8163338c/GM12878_REP2_1.merged.fastq.gz.d8fe0u64pm9s7691m280.7381975040.d8fe0rm4pm9s769...``` *Command Line*
```nextflow run '<https://github.com/nf-core/rnavar>' -name stoic_dubinsky -params-file '<https://api.cloud.seqera.io/ephemeral/i8QGA1fBXd_gMikLONykvA.json>' -with-tower -r dev -profile test_full``` Jun 2, 2026 at 1:55 PM