A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

:x: *rnavar/test_full* failed :crying_cat_face: *Run Name*
evil_hamilton *Duration*
13m 3s *Status*
:x: Failed *Error Message*
```1:24PM INF [seqera-fusion] setting up AWS Batch spot instance monitoring provider=aws-batch
1:24PM INF [seqera-fusion] instance metadata ami-id=ami-0acc5dd6b31082def instance-id=i-03df7359adc64e2ba instance-type=c6id.32xlarge
1:24PM INF [seqera-fusion] starting incremental snapshot timer interval=300000
FUSION_GPU_USED=false
1:25PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 400, RequestID: 81GB79G2P05KF9VH, HostID: lkH62NxACJkrAujwHwvyu8AEVD56IQqd9WZEKySc8VfFfEtTL7dVkcepgK98TfYJFHnKkiSSJf6NN/GYIBdQ14KM+uTONx3u, api error InvalidRequest: The specified copy source is larger than the maximum allowable size for a copy source: 5368709120" goid=37212 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/1d/e720d272d02d093ee5196444262ba8/K562_REP1_1.merged.fastq.gz length=6710886400 offset=0
1:25PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=37213 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/1d/e720d272d02d093ee5196444262ba8/K562_REP1_1.merged.fastq.gz.d8fdj14sf1os761fige0.6710886400.d8fdiu4sf1os761fieog.chk length=134217728 offset=0
1:25PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=37216 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/1d/e720d272d02d093ee5196444262ba8/K562_REP1_1.merged.fastq.gz.d8fdj1ssf1os761figh0.7113539584.d8fdiu4sf1os761fieog.chk length=134217728 offset=0
1:25PM ERR [seqera-fusion] cannot upload part copy error="operation error S3: UploadPartCopy, https response error StatusCode: 0, RequestID: , HostID: , canceled, context canceled" goid=37215 id=/s3/nf-core-awsmegatests/work/rnavar/work-dev/1d/e720d272d02d093ee5196444262ba8/K562_REP1_1.merged.fastq.gz.d8fdj1ksf1os761figg0.6979321856.d8fdiu4sf1os761fieog.chk ...``` *Command Line*
```nextflow run '<https://github.com/nf-core/rnavar>' -name evil_hamilton -params-file '<https://api.cloud.seqera.io/ephemeral/O4KrNwT8MYzCOtK1cKzQMg.json>' -with-tower -r dev -profile test_full``` Jun 2, 2026 at 1:25 PM