A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

`NEXTFLOW INSPECT|CONFIG -O JSON` NOT JUST RETURNING JSON BUT ALSO GENERAL LOGGING MESSAGES :shakefist: :sob::shakefist: :sob::shakefist: :sob::shakefist: :sob:

aren't they separated by stderr / stdout?

nope, and some of the logging is not even errors, but general info e.g. <https://nfcore.slack.com/archives/CE5LG7WMB/p1778164110386639?thread_ts=1778159358.444529&cid=CE5LG7WMB>

I opened <https://github.com/nextflow-io/nextflow/issues/7116>

hmm, we should be better at this. A lot of these messages should alyways just be stderr, wherever they come from

<https://github.com/nextflow-io/nextflow/pull/7121>

I have been complaining about nextflow not using stderr a lot