A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

It's already fixed in dev, but the action runs from main. (Needed a uv setup step)

Looks like it's running off my fork though..?

Still no uv setup step on `dev` : <https://github.com/nf-core/tools/blob/dev/.github/workflows/nextflow-source-test.yml>

<https://github.com/nf-core/tools/pull/4208>

hmm, weird, I thought i had these fixes (the `--all-extras` should only be needed for developing)

ah, yes, I had a PR to first test it on your fork <https://github.com/ewels/nf-core-tools/pull/8>

hah I'm doing the same `--project` stuff now trying to fix the paths. I'm playing with similar

if you are tired of testing, I can take over, I think I had similiar issues over at tools when we switched to uv.

Trying to throw claude at it but not getting far

I added in a cache flag step that skips the test if we have had a previous successful run with that nextflow commit

CleanShot 2026-04-22 at 10.50.11@2x.png

&gt; I added in a cache flag step that skips the test if we have had a previous successful run with that nextflow commit
will not add this for now, because even though nextflow might not have changed nf-core tools might have.

yeah but tools runs its own CI on changes

but not against the `master` version of nextflow

true.. easy enough to make the cache check also include the tools dev commit if you want