A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

<https://github.com/nf-core/test-datasets/pull/1981|#1981 Add hg38 cytoBand for telomerehunter module tests>
Pull request opened by <https://github.com/pinin4fjords|pinin4fjords>
*Summary*

• Add `data/genomics/homo_sapiens/genome/cytoBand_hg38.txt` from UCSC
• Needed by the telomerehunter nf-core module to pass the `-b` (banding file) flag

*Why*

TelomereHunter defaults to a bundled hg19 cytoband when no `-b` flag is given. On hg38-aligned BAMs, 8 chromosomes are longer than the hg19 cytobands, causing an `IndexError` crash. The companion nf-core/modules PR adds a cytoband input to the telomerehunter module and needs this test data.

*Source*

`<http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/cytoBand.txt.gz>`
1549 lines, tab-separated: chr, start, end, band, stain.
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

Review on #1981 Add hg38 cytoBand for telomerehunter module tests
Review approved by <https://github.com/mashehu|mashehu> on <https://github.com/pinin4fjords|pinin4fjords's> pull request
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

<https://github.com/nf-core/test-datasets/pull/1981|#1981 Add hg38 cytoBand for telomerehunter module tests>
Pull request merged by <https://github.com/pinin4fjords|pinin4fjords>
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>