A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

<https://github.com/nf-core/test-datasets/pull/1979|#1979 Add S. cerevisiae RNA-seq test data and homo_sapiens BED12>
Pull request opened by <https://github.com/pinin4fjords|pinin4fjords>
*Summary*

Adds test data for the `bam_qc_rnaseq` subworkflow in nf-core/modules (<https://github.com/nf-core/modules/pull/11147|nf-core/modules#11147>).

*S. cerevisiae (from GSE110004, rnaseq branch)*

| File                                    | Size  | Description                                                           |
| --------------------------------------- | ----- | --------------------------------------------------------------------- |
| illumina/bam/test.paired_end.sorted.bam | 85KB  | Paired-end, WT_REP2, downsampled (samtools view -s 42.02)             |
| illumina/bam/test.single_end.sorted.bam | 88KB  | Single-end, RAP1_UNINDUCED_REP1, downsampled (samtools view -s 42.04) |
| BAI indices                             | &lt;1KB  | Generated with samtools index                                         |
| genome_gfp.bed12                        | 5KB   | BED12 derived from existing genome_gfp.gtf                            |
| genome/genome.fa                        | 234KB | Reference genome                                                      |
| genome/genome.fa.fai                    | &lt;1KB  | FASTA index                                                           |

Uses the existing `genome_gfp.gtf` for annotation (no new GTF added).

*Homo sapiens*

| File                | Size | Description                                        |
| ------------------- | ---- | -------------------------------------------------- |
| genome/genome.bed12 | &lt;1KB | BED12 gene model derived from genome.gtf for chr22 |

READMEs included in subdirectories with provenance and downsampling details.
:robot_face: Generated with <https://claude.com/claude-code|Claude Code>
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

Review on #1979 Add BED12 gene model for homo_sapiens chr22
Review comment by <https://github.com/mashehu|mashehu> on <https://github.com/pinin4fjords|pinin4fjords's> pull request
please add info about this file to the readme
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

Review on #1979 Add S. cerevisiae RNA-seq test data and homo_sapiens BED12
Review approved by <https://github.com/mashehu|mashehu> on <https://github.com/pinin4fjords|pinin4fjords's> pull request
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>

<https://github.com/nf-core/test-datasets/pull/1979|#1979 Add S. cerevisiae RNA-seq test data and homo_sapiens BED12>
Pull request merged by <https://github.com/pinin4fjords|pinin4fjords>
<https://github.com/nf-core/test-datasets|nf-core/test-datasets>