Matthias Zepper
03/27/2026, 7:28 PMNXF_PLUGINS_DIR and to me it also seems that it it indeed recognizes the correct path /vulpes/proj/ngis/ngi2016004/nobackup/nf-core-tower/tower-nxf-home/.nextflow/plugins
I have also pinned the plugin versions in the config:
plugins {
id 'nf-co2footprint@1.2.0'
id 'nf-tower@1.23.0'
id 'nf-schema@2.6.1'
}
Yet, it seems that Nextflow desperately wants to reach home for reasons that I do not understand:
Mar-27 19:45:08.626 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/vulpes/proj/ngis/ngi2016004/nobackup/nf-core-tower/tower-nxf-home/.nextflow/plugins; core-plugins: nf-amazon@3.4.1,nf-azure@1.20.2,nf-cloudcache@0.5.0,nf-codecommit@0.5.0,nf-console@1.3.0,nf-google@1.23.3,nf-k8s@1.2.2,nf-tower@1.17.1,nf-wave@1.16.1
Mar-27 19:45:08.658 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: []
Mar-27 19:45:08.658 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: []
Mar-27 19:45:08.659 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode
Mar-27 19:45:08.668 [main] DEBUG nextflow.util.RetryConfig - Missing nextflow session - using default retry config
Mar-27 19:45:08.731 [main] INFO org.pf4j.AbstractPluginManager - No plugins
Mar-27 19:45:08.732 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins declared=[nf-co2footprint@1.2.0, nf-tower@1.23.0, nf-schema@2.6.1]
Mar-27 19:45:08.733 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[nf-tower@1.17.1]
Mar-27 19:45:08.734 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[nf-co2footprint@1.2.0, nf-tower@1.23.0, nf-schema@2.6.1]
Mar-27 19:49:29.838 [main] DEBUG io.seqera.http.HxClient - HTTP request retry attempt 1: null
Mar-27 19:53:52.421 [main] DEBUG io.seqera.http.HxClient - HTTP request retry attempt 2: null
Mar-27 19:58:15.255 [main] DEBUG io.seqera.http.HxClient - HTTP request retry attempt 3: null
Mar-27 20:02:39.365 [main] DEBUG io.seqera.http.HxClient - HTTP request retry attempt 4: null
Mar-27 20:07:02.116 [main] DEBUG io.seqera.http.HxClient - HTTP request retry attempt 5: null
Mar-27 20:07:02.121 [main] ERROR nextflow.cli.Launcher - Conversion = '4'
java.util.UnknownFormatConversionException: Conversion = '4'
at java.base/java.util.Formatter.parse(Formatter.java:2852)
at java.base/java.util.Formatter.format(Formatter.java:2774)
at java.base/java.util.Formatter.format(Formatter.java:2728)
at java.base/java.lang.String.format(String.java:4386)
at org.pf4j.util.StringUtils.format(StringUtils.java:39)
at org.pf4j.PluginRuntimeException.<init>(PluginRuntimeException.java:41)
at nextflow.plugin.HttpPluginRepository.fetchMetadata0(HttpPluginRepository.groovy:140)
at nextflow.plugin.HttpPluginRepository.fetchMetadata(HttpPluginRepository.groovy:123)
at nextflow.plugin.HttpPluginRepository.prefetch(HttpPluginRepository.groovy:70)
at nextflow.plugin.PluginUpdater.prefetchMetadata(PluginUpdater.groovy:154)
at nextflow.plugin.PluginsFacade.start(PluginsFacade.groovy:398)
at nextflow.plugin.PluginsFacade.load(PluginsFacade.groovy:291)
at nextflow.plugin.Plugins.load(Plugins.groovy:50)
at nextflow.cli.CmdRun.run(CmdRun.groovy:363)
at nextflow.cli.Launcher.run(Launcher.groovy:515)
at nextflow.cli.Launcher.main(Launcher.groovy:675)
because all those plugins are available in the NXF_PLUGINS_DIR.
ls /vulpes/proj/ngis/ngi2016004/nobackup/nf-core-tower/tower-nxf-home/.nextflow/plugins
nf-amazon-1.16.2 nf-co2footprint-1.0.0-beta nf-cws-1.0.2 nf-google-1.8.3 nf-prov-1.2.3 nf-schema-2.4.0 nf-tower-1.11.4 nf-tower-1.5.3 nf-validation-1.1.4 nf-weblog-1.1.2
nf-amazon-1.3.4 nf-co2footprint-1.0.0-beta1 nf-cws-1.0.3 nf-gpt-0.4.0 nf-prov-1.2.4 nf-schema-2.4.1 nf-tower-1.12.0 nf-tower-1.5.4 nf-wave-0.13.0 nf-wr-1.2.0-rc.2
nf-amazon-2.1.3 nf-co2footprint-1.0.0-rc nf-cws-1.0.5 nf-hello-0.1.0 nf-prov-1.3.0 nf-schema-2.4.2 nf-tower-1.13.0 nf-tower-1.5.6 nf-wave-0.8.4 xpack-amzn-1.2.1
nf-amazon-2.1.4 nf-co2footprint-1.0.0-rc.1 nf-dotenv-1.0.0 nf-hello-0.2.0 nf-prov-1.4.0 nf-schema-2.5.0 nf-tower-1.14.0 nf-tower-1.6.2 nf-wave-1.0.0 xpack-amzn-1.3.1
nf-amazon-2.5.2 nf-co2footprint-1.0.0-rc.2 nf-ffq-0.2.0 nf-hello-0.3.0 nf-prov-1.5.0 nf-schema-2.5.1 nf-tower-1.17.2 nf-tower-1.6.3 nf-wave-1.10.0 xpack-amzn-1.6.0
nf-amazon-2.9.1 nf-co2footprint-1.0.0-rc.3 nf-float-0.3.1 nf-hello-0.5.0 nf-prov-1.6.0 nf-schema-2.6.0 nf-tower-1.17.3 nf-tower-1.9.1 nf-wave-1.11.0 xpack-google-1.0.0
nf-amazon-3.4.1 nf-co2footprint-1.1.0 nf-float-0.4.6 nf-ignite-1.2.3 nf-prov-1.7.0 nf-schema-2.6.1 nf-tower-1.17.4 nf-tower-1.9.3 nf-wave-1.11.1 yellowdog-1.0.1
nf-azure-1.0.1 nf-co2footprint-1.2.0 nf-ga4gh-1.0.5 nf-iridanext-0.3.0 nf-quilt-0.4.5 nf-snowflake-0.6.0 nf-tower-1.17.5 nf-validation-0.3.1 nf-wave-1.12.0
nf-azure-1.10.2 nf-codecommit-0.1.4 nf-ga4gh-1.1.0 nf-jarvice-0.7.0 nf-quilt-0.9.1 nf-sqldb-0.5.0 nf-tower-1.18.0 nf-validation-0.3.2 nf-wave-1.12.1
nf-azure-1.3.2 nf-codecommit-0.1.5 nf-ga4gh-1.3.0 nf-nomad-0.3.1 nf-schema-2.0.0 nf-synapse-1.0.0 nf-tower-1.19.0 nf-validation-0.3.3 nf-wave-1.13.0
nf-azure-1.6.0 nf-codecommit-0.2.2 nf-google-1.13.2-patch1 nf-parquet-0.2.0 nf-schema-2.0.1 nf-tencentcloud-2.0.1 nf-tower-1.20.0 nf-validation-1.0.0 nf-wave-1.14.0
nf-boost-0.4.0 nf-console-1.0.3 nf-google-1.15.2 nf-pgcache-1.0.0 nf-schema-2.1.1 nf-tower-1.11.0 nf-tower-1.21.0 nf-validation-1.1.0 nf-wave-1.14.1
nf-cloudcache-0.2.0 nf-console-1.0.5 nf-google-1.7.3 nf-prov-1.1.0 nf-schema-2.2.0 nf-tower-1.11.1 nf-tower-1.22.0 nf-validation-1.1.1 nf-wave-1.16.1
nf-cloudcache-0.4.2 nf-console-1.0.6 nf-google-1.7.3-patch1 nf-prov-1.2.1 nf-schema-2.2.1 nf-tower-1.11.2 nf-tower-1.23.0 nf-validation-1.1.2 nf-wave-1.7.3
nf-co2footprint-1.0.0 nf-console-1.1.4 nf-google-1.8.2 nf-prov-1.2.2 nf-schema-2.3.0 nf-tower-1.11.3 nf-tower-1.5.12 nf-validation-1.1.3 nf-weblog-1.1.0
What am I missing?Maxime Garcia
03/30/2026, 7:04 AMMatthias Zepper
03/30/2026, 8:03 AMJorge
03/30/2026, 1:17 PMMatthias Zepper
03/30/2026, 1:25 PMJorge
03/30/2026, 2:13 PMJorge
03/30/2026, 2:14 PMoffline = env.get('NXF_OFFLINE') == 'true'Matthias Zepper
03/30/2026, 2:17 PMexport NXF_OFFLINE=true && tw launch .. as well.Matthias Zepper
03/30/2026, 2:19 PMJorge
03/30/2026, 2:21 PMMatthias Zepper
03/30/2026, 2:25 PMnextflow run work like a charm. ❤️🔥
It is only as soon as I try setting up our self-hosted enterprise instance of Seqera Platform with our offline cluster that things tend to get tricky. But we are also again behind the latest version penguin construction, so I am now hoping that upgrading Platform itself will help?