A community effort to collect a curated set of analysis pipelines built using Nextflow.

nf-core

Hey all!  Just opened a request to add a new plugin `nf-logsaver` to the Nextflow plugin directory.  It will automatically move the '.command.err', '.command.sh' and '.command.out' for each step in a pipeline into a new log directory. It will also rename them with the step name and the short hash of that iteration to make it easier to a) find the log files that you need to debug a particular step and b) make sure that they are safely out of the work directory (in the case that you need/want to hold on to these) without needing to modify the underlying pipeline.  Would love any feedback or suggestions you have, code currently lives here: <https://github.com/miraep8/nf-logsaver>

Thank you for approving my plugin ownership! :slightly_smiling_face:  The `nf-logsaver` plugin is now live on the `nextflow` plugin hub! :tada: You can add it to your pipeline runs by adding the line `-plugins nf-logsaver@0.1.0` to your `nextflow` command and it should automatically download and save all your logfiles to your results directory (in a folder called `logsaver_command_files`)Let me know if you have any issues with the `nextflow` version, currently it requires `nextflow==24.10.0` but I think that could probably be relaxed if anyone has issues with it. Also happy to incorporate any feedback you all might have - thanks again! :slightly_smiling_face: