A new request to upload a dataset to nf-core AWS S3 bucket has been made! • Requested by: @Nour Mahfel • Pipeline name: Longraredisease • Why is this needed?: Structural variant annotation and analysis - https://github.com/monarch-initiative/SvAnna • Size of the dataset: ~674 MB • URL: https://zenodo.org/records/17747798/files/2304_hg38.svanna.zip • Related files: Core team will add this dataset to the nf-core bucket. Please react to the message with ✅ when this is done. [This process is not automated]

Hi all, could you please help to upload this dataset to nf-core aws? Svanna is a structural variant annotation tool used in the longraredisease pipeline. I also want to add svanna to nf-core modules. Thank you in advance ☺️ https://github.com/monarch-initiative/SvAnna

hi, sorry for the long radio silence. Before I upload it: is there any chance you can subset the data somehow (different species or just subsample the current files)? Are the maintainers testing their tool with these files or a special dataset?

Hi Matthias, no worries at all. This is a reference dataset for pipeline users to be able to run svanna. Would it better to host it in the #C05DACM4HPV? Tagging @Maxime Garcia here as well. Thank you ☺️

Looks indeed like something that could fit there

Thank you so much Maxime. No rush at all - just let me know when it’s ready or if you need anything ☺️