alex smith
03/10/2026, 10:53 AMfromFilePairs ), would it be advisable/best practise/more robust to map/sort the output of the first process for the next process, to ensure the fastq list part the tuple is ordered R1 then R2. eg trimout = trimmomatic.out.trimmomatic_files.map { meta, reads -> [ meta, reads.sort() ] } - where trimout is the input for the second fastq processing step/module. Or will nextflow automatically and always sort the fastq list lexicographically?