hiya. If i'm chaining a number of processes for wh...
# nostupidquestions
a
hiya. If i'm chaining a number of processes for which the input is fastq pairs (the first process receiving input based on
fromFilePairs
), would it be advisable/best practise/more robust to map/sort the output of the first process for the next process, to ensure the fastq list part the tuple is ordered R1 then R2. eg
trimout = trimmomatic.out.trimmomatic_files.map  { meta, reads -> [ meta, reads.sort() ] }
- where trimout is the input for the second fastq processing step/module. Or will nextflow automatically and always sort the fastq list lexicographically?