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02/09/2026, 11:40 PMmetagenomics directory. Although there is already a metagenome directory under data/genomics/prokaryotes/metagenome/, there is a discussion in the #modules nf-core Slack channel to add more files for metagenomics testing.
I propose that metagenomics should be a directory under the data/ directory, at the same level as genomics and metabarcoding. The prokaryotes directory where it currently sits contains mostly WGS data for model organisms, which is a different scope. This PR introduces this change. I would like to follow up with additional PRs to move content from the data/genomics/prokaryotes/metagenome to this new directory, fix the corresponding tests, and add more files for metagenomic testing.
cc @James Fellows Yates @prototaxites @SPPearce
Best,
Vini
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Summary of changes:
• Add data for testing the rgi modules. See nf-core/modules#9873 for discussion.
nf-core/test-datasetsGitHub
02/11/2026, 8:50 AMGitHub
02/27/2026, 7:05 AMGitHub
02/27/2026, 7:17 AM