Where should I begin troubleshooting if GH action'...
# helpp
Pieter Moris
02/16/2026, 11:06 AMWhere should I begin troubleshooting if GH action's for nf-test fail, while my local ones pass? For a subworkflow in case that matters.
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mashehu
02/16/2026, 11:11 AMdo they pass on github codespaces?
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Pieter Moris
02/16/2026, 11:26 AMTurns out they do 😮
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mashehu
02/16/2026, 11:27 AMdo you have a link to the failing job?
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Pieter Moris
02/16/2026, 11:28 AMPieter Moris
02/16/2026, 11:28 AMIt's failing around line 846, where it still uses the old snapshot (the pr adds that new index_id)
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mashehu
02/16/2026, 11:30 AMit looks like the snapshots where not updated then, because the CI points out the missing `index_id`: https://github.com/nf-core/modules/actions/runs/22059854038/job/63737189947?pr=9983#step:6:633
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Pieter Moris
02/16/2026, 11:30 AMPieter Moris
02/16/2026, 11:31 AMI ran the codespaces from the latest commit on that PR too, so there can't be any unpushed local changes there either, can there?
Pieter Moris
02/16/2026, 11:47 AMCould it be some sort of caching issue? Or am I just overlooking something obvious?
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mashehu
02/16/2026, 11:59 AMah, the problem is that you also need to update FASTQ_DECONTAMINATE_DEACON_HOSTILE which is actually the failing subworkflow, not the one you updated
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Pieter Moris
02/16/2026, 12:00 PMWoosh! I completely missed that...thanks a bunch!
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