Hi everyone!! I'm trying to understand why I get fail lint on PR and linting works good on the actual code?? can anyone please take a look and see what you understand? https://github.com/nf-core/rnaseq/pull/1642/ Many thanks!

what do you mean with linting on the actual code? Do you mean when you run it locally?

yes locally but with all profiles... ╭───────────────────────╮ │ LINT RESULTS SUMMARY │ ├───────────────────────┤ │ [✔️] 622 Tests Passed │ │ [?] 1 Test Fixed │ │ [?] 8 Tests Ignored │ │ [!] 109 Test Warnings │ │ [✗] 0 Tests Failed │ ╰───────────────────────╯

which nf-core version are you using locally?

version 3.5.0.dev0

in the ci it is linted with 3.5.1 https://github.com/nf-core/rnaseq/actions/runs/19758745109/job/56615575772?pr=1642#step:7:26

It was an issue with tools not update - template thig --many thanks